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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54321396_54321597_R

Intron Information:

Intron Rank:
131349
Intron Class:
major
Intron Phase:
Intron Coordinates:
54321396 - 54321597
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTAAATGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
33.8
-1.8
3.3
49
46.8
Minor BPS
44.1
-0.3
2
67.24
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017877
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032707
54320984 - 54323494
2511