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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5432603_5433254_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5432603 - 5433254
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTATTACCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTACCT
Flanking Amino Acid:
SDILVCGPGAGTCPPDYICL
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.9
0.58
0.9
67.9
38.9
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
60.4
0.4
1.9
81.66
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009789
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010509
5426939 - 5460201
33263