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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5436820_5438809_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5436820 - 5438809
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
GATTATTTAACT
Flanking Amino Acid:
AVSIITSVLEELEESQRRCP
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
71.1
40.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
85.7
0.8
0.7
84.6
30.3
Minor 5ss
32.6
-2
3.1
35.3
41.4
Minor BPS
71.8
0.76
1.4
83.26
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009789
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010509
5426939 - 5460201
33263