About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54384915_54385738_R

Intron Information:

Intron Rank:
143436
Intron Class:
major
Intron Phase:
Intron Coordinates:
54384915 - 54385738
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATCCATCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.7
80.8
24.5
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
46.5
-0.2
1.9
57.53
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024477
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039171
54384705 - 54390711
6007