Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5439049_5439382_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5439049 - 5439382

Intron Length:

334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGATCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

TGTTTCTTGATC

Flanking Amino Acid:

FKSMLNVGNLVFTGIFTAEM

Intron Amino Acid Position:

624

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.9

35.2

Major BPS

83.8

0.84

73.6

41.8

Major PPT

78.2

0.64

0.9

72.6

36.4

Minor 5ss

38.8

-1.3

2.9

45.4

43.9

Minor BPS

74.2

0.74

1.1

77.77

31.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009789

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010509

5426939 - 5460201

33263