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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5439584_5440626_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5439584 - 5440626
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTACACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTAACACAACT
Flanking Amino Acid:
TLSVLRSFRLLRVFKLAKSW
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.6
0.69
0.9
76.6
36.7
Minor 5ss
43.9
-0.7
3.2
62.5
43.1
Minor BPS
47.9
-0
2
71.5
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009789
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010509
5426939 - 5460201
33263