Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54488249_54496296_F

Intron Information:

Intron Rank:

132746

Intron Class:

major

Intron Phase:

Intron Coordinates:

54488249 - 54496296

Intron Length:

8048

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTGATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

TTTTCCTGATGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

78.8

0.71

67.6

40.6

Major PPT

74.1

0.54

0.9

70.1

35.4

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

60.5

0.41

84.91

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033501

54478745 - 54496823

18079