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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5449058_5449284_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5449058 - 5449284
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
WCWLDFFIVDVSLINLLGSS
Intron Amino Acid Position:
1153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.6
29.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.1
0.84
0.7
84.7
23
Minor 5ss
39.8
-1.1
3
55.2
42.1
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009789
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010509
5426939 - 5460201
33263