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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5456799_5458353_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5456799 - 5458353
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTCCCTTTTATT
Flanking Amino Acid:
DIVVVIMSLLALLLSGIGEA
Intron Amino Acid Position:
1471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.6
0.73
0.7
81.4
29
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
61
0.43
1.6
77.02
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009789
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010509
5426939 - 5460201
33263