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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54684411_54686897_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54684411 - 54686897
Intron Length:
2487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCATATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATAT
Flanking Amino Acid:
KKWCNLTEFINTGRRMPSII
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
75.1
0.57
0.9
69.7
34.6
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
62.7
0.48
1.9
85.97
39.8

Associated Gene:

Gene:
RAMP3
Ensembl Gene ID:
ENSAPLG00000023187
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047230
54683075 - 54708262
25188