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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54687031_54688876_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54687031 - 54688876
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTATCTTACCT
Flanking Amino Acid:
TLGLAGEGLAGAHQQTRPCN
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.3
0.5
0.9
66.6
39.5
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
63.8
0.51
1.7
79.88
42.3

Associated Gene:

Gene:
RAMP3
Ensembl Gene ID:
ENSAPLG00000023187
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047230
54683075 - 54708262
25188
ENSAPLT00000042390
54651832 - 54708262
56431