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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54751024_54751565_R

Intron Information:

Intron Rank:
134960
Intron Class:
major
Intron Phase:
Intron Coordinates:
54751024 - 54751565
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CATGTGATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TAAAACCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.2
30.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.3
0.46
1
62.3
42.8
Minor 5ss
31.6
-2.1
3.2
40.1
46.3
Minor BPS
52.8
0.17
1.9
73.55
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046698
54750590 - 54753695
3106