About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54751802_54751961_R

Intron Information:

Intron Rank:
134961
Intron Class:
major
Intron Phase:
Intron Coordinates:
54751802 - 54751961
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTAGT
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAC
U12 Branch Point Sequence:
CCTTCCTCTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
41.5
Major BPS
60.2
0.25
1.3
64
39.8
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
36.5
-1.5
3
48.4
42.4
Minor BPS
39.6
-0.7
3.7
68.02
48.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046698
54750590 - 54753695
3106