About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54752118_54753126_R

Intron Information:

Intron Rank:
134962
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
54752118 - 54753126
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGACTGGACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTATCTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
54.7
0.11
1.1
46.9
44.7
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
55.5
0.25
1.8
79.31
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019958
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046698
54750590 - 54753695
3106