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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54754878_54756112_R

Intron Information:

Intron Rank:
134493
Intron Class:
major
Intron Phase:
Intron Coordinates:
54754878 - 54756112
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.8
40.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.7
80.7
31
Minor 5ss
43.3
-0.7
2.9
55.6
48.6
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019652
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020759
54754559 - 54756857
2299