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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54764848_54765147_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54764848 - 54765147
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCAAC
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTGTCTTTTACA
Flanking Amino Acid:
SGGREEKHSTRCGHCKQFAP
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.2
66.1
39.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
88.6
0.87
0.7
83.7
31.3
Minor 5ss
42.1
-0.9
2.5
51.9
45
Minor BPS
70.7
0.64
1.6
78.96
37.6

Associated Gene:

Gene:
PDIA4
Ensembl Gene ID:
ENSAPLG00000010645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045012
54764134 - 54770205
6072