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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54765354_54766038_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54765354 - 54766038
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
AACTATCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
CAAACTTTAACT
Flanking Amino Acid:
VDYDGSRTEDEIVAKVKEVS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
74.7
0.56
0.9
70.2
40.1
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
68.1
0.65
1.3
74.83
41.6

Associated Gene:

Gene:
PDIA4
Ensembl Gene ID:
ENSAPLG00000010645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045012
54764134 - 54770205
6072
ENSAPLT00000030266
54761789 - 54770205
8417
ENSAPLT00000011111
54760540 - 54770220
9681