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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54768350_54768740_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54768350 - 54768740
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
EPKMHVLDLKDSTDGSEIKE
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
71.3
0.53
1
61.3
37
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PDIA4
Ensembl Gene ID:
ENSAPLG00000010645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045012
54764134 - 54770205
6072
ENSAPLT00000030266
54761789 - 54770205
8417
ENSAPLT00000011111
54760540 - 54770220
9681