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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54768898_54768982_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54768898 - 54768982
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
AAATCACTAATC
Flanking Amino Acid:
TVDFSFDYRVATQYWRGKVL
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
76.1
0.59
0.9
73.6
37
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
49.4
-0
1.9
61.49
36.9

Associated Gene:

Gene:
PDIA4
Ensembl Gene ID:
ENSAPLG00000010645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011111
54760540 - 54770220
9681
ENSAPLT00000045012
54764134 - 54770205
6072
ENSAPLT00000030266
54761789 - 54770205
8417