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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54769217_54769789_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54769217 - 54769789
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
TCCTTCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTACACTAATA
Flanking Amino Acid:
LRQFVLAFKKGKLKPIVKSQ
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
80
0.75
1
78.6
31
Major PPT
76.2
0.59
0.7
69.2
31.4
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
49.7
-0
2
66.18
40.1

Associated Gene:

Gene:
PDIA4
Ensembl Gene ID:
ENSAPLG00000010645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011111
54760540 - 54770220
9681
ENSAPLT00000045012
54764134 - 54770205
6072
ENSAPLT00000030266
54761789 - 54770205
8417