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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54837595_54838321_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54837595 - 54838321
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GATTAATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTGATTAATT
Flanking Amino Acid:
KRFRRADEVKSMFNSNRQKI
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71.2
0.48
1
67.2
43.4
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
60
0.39
2
80.85
41.3

Associated Gene:

Gene:
EZH2
Ensembl Gene ID:
ENSAPLG00000010543
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045565
54816484 - 54872865
56382
ENSAPLT00000011041
54816484 - 54872865
56382