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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54838451_54841307_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54838451 - 54841307
Intron Length:
2857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTAA
5'SS Class:
major
3'SS Sequence:
CCTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTAATTTTAACC
Flanking Amino Acid:
SVSSLRGTRECSVTSDIDFP
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
72.3
35.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.7
0.83
0.7
84.8
28.4
Minor 5ss
34.5
-1.8
2.9
40.7
45.6
Minor BPS
65.3
0.46
1.3
68.39
36.7

Associated Gene:

Gene:
EZH2
Ensembl Gene ID:
ENSAPLG00000010543
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011041
54816484 - 54872865
56382
ENSAPLT00000045565
54816484 - 54872865
56382