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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54846132_54849572_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54846132 - 54849572
Intron Length:
3441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTCCAAAATT
Flanking Amino Acid:
NYDGKVHGDREKESHPPRRF
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
67.6
39.4
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
75.6
0.58
1
71.7
38.2
Minor 5ss
32.7
-2
3
39.6
45.9
Minor BPS
65.8
0.58
1.9
88.85
36.2

Associated Gene:

Gene:
EZH2
Ensembl Gene ID:
ENSAPLG00000010543
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011041
54816484 - 54872865
56382