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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54849676_54850216_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54849676 - 54850216
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTACTGAATA
Flanking Amino Acid:
DKGTAEELKEKYKELTEQQL
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.7
27.9
Major BPS
100
1.24
0.5
100
0
Major PPT
74.4
0.55
1
79.4
26.6
Minor 5ss
34.5
-1.8
3
40.8
39.4
Minor BPS
62.9
0.4
1.6
73.4
38.4

Associated Gene:

Gene:
EZH2
Ensembl Gene ID:
ENSAPLG00000010543
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045565
54816484 - 54872865
56382
ENSAPLT00000011041
54816484 - 54872865
56382