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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54860667_54861053_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54860667 - 54861053
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCAATAACT
Flanking Amino Acid:
EKKDETSSSSEANSRCQTPI
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
74.9
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
0.9
76.9
35.8
Minor 5ss
48.6
-0.1
2.8
64.8
41.1
Minor BPS
65
0.55
1.9
86.43
39.1

Associated Gene:

Gene:
EZH2
Ensembl Gene ID:
ENSAPLG00000010543
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045565
54816484 - 54872865
56382
ENSAPLT00000011041
54816484 - 54872865
56382