About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54861689_54867247_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54861689 - 54867247
Intron Length:
5559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TTCCTGTCAACC
Flanking Amino Acid:
TPPRKKKRKHRLWAAHCRKI
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
85.9
0.81
0.8
80.6
37
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
47.5
-0.2
2.2
63.43
42.2

Associated Gene:

Gene:
EZH2
Ensembl Gene ID:
ENSAPLG00000010543
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045565
54816484 - 54872865
56382
ENSAPLT00000011041
54816484 - 54872865
56382