About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54871564_54871677_F


Intron Information:

Intron Rank:
17

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
54871564 - 54871677

Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGTTTT

5'SS Class:
strong_major

3'SS Sequence:
TTCTTTTTAACAG|T

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTATAT

U12 Branch Point Sequence:
TTCTTTTTAACA

Flanking Amino Acid:
HSVNPNCYAKVMMVNGDHRI

Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
99.2
1.16
0.6
97
9.5

Major BPS
79.2
0.73
1
75.3
39.4

Major PPT
86.6
0.82
0.8
84.3
29.1

Minor 5ss
46.1
-0.4
2.8
66.9
44.4

Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
EZH2

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

54816484 - 54872865
56382

54816484 - 54872865
56382