Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54875850_54875927_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

54875850 - 54875927

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGAAGG

5'SS Class:

major

3'SS Sequence:

ACTCGGCAAATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTAGCAAAATT

Flanking Amino Acid:

IEKEYLERVDGM*

Intron Amino Acid Position:

747

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

0.9

64.2

41.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

50.6

0.01

44.1

36.1

Minor 5ss

27.6

-2.6

2.7

28.4

37.1

Minor BPS

44.5

-0.3

2.2

67.91

43.1

Associated Gene:

Gene:

CUL1

Ensembl Gene ID:

ENSAPLG00000010478

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021174

54875427 - 54911716

36290

ENSAPLT00000019589

54875842 - 54907364

31523