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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54875977_54876879_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54875977 - 54876879
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
TTTCTCCTCACA
Flanking Amino Acid:
RFKPRVPVIKKCIDILIEKE
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.4
28.8
Major BPS
61.4
0.28
1
53
33.7
Major PPT
85.4
0.8
0.7
80.2
25.2
Minor 5ss
32.6
-2
3.1
39.4
46.5
Minor BPS
51.9
0.05
2.1
73.2
38.4

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806
ENSAPLT00000045893
54875911 - 54911208
35298
ENSAPLT00000021174
54875427 - 54911716
36290