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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54876994_54877851_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54876994 - 54877851
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTAGT
5'SS Class:
major
3'SS Sequence:
CTTTGATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TCTTTCTGACTT
Flanking Amino Acid:
IEEDRKLLIQAAIVRIMKMR
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.8
38.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
75.2
0.57
1
69.5
40.7
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
57.3
0.31
1.7
75.82
41.6

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806
ENSAPLT00000045893
54875911 - 54911208
35298