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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54877958_54879136_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54877958 - 54879136
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
TLIKLYLGYKNKKLRVNINV
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045893
54875911 - 54911208
35298
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806