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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54879220_54879304_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54879220 - 54879304
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTATTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
LQILLKSKLLVLEDENANVD
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89.5
0.89
0.7
85.1
29.3
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806
ENSAPLT00000045893
54875911 - 54911208
35298