About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54879353_54880678_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54879353 - 54880678
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGTGATT
5'SS Class:
major
3'SS Sequence:
TGTAATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTTCTGTAATT
Flanking Amino Acid:
QLTDSTQIKMDILAQVLQIL
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.1
68
42.5
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
75.7
0.58
0.9
69.9
41
Minor 5ss
37
-1.5
3.6
53.7
45.5
Minor BPS
70.8
0.73
2
91.31
32.6

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045893
54875911 - 54911208
35298
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523