About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54879353_54882063_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54879353 - 54882063
Intron Length:
2711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTAATTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTTCTGTAATT
Flanking Amino Acid:
NCFKNRYTLQDILAQVLQIL
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
81
33.2
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
75.7
0.58
0.9
69.9
41
Minor 5ss
36
-1.6
3.2
48.9
46.9
Minor BPS
70.8
0.73
2
91.31
32.6

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010964
54875911 - 54911716
35806