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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54880772_54882063_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54880772 - 54882063
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTCTCTGATTT
Flanking Amino Acid:
NCFKNRYTLQASTFQMAILL
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
81
33.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.4
0.57
1
73.9
36.8
Minor 5ss
36
-1.6
3.2
48.9
46.9
Minor BPS
52
0.14
1.7
72.48
38.5

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000045893
54875911 - 54911208
35298
ENSAPLT00000021174
54875427 - 54911716
36290