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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54883976_54884510_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54883976 - 54884510
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAA
Flanking Amino Acid:
AEASMISKLKQACGFEYTSK
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.2
0.54
1
67.6
41.6
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
70.1
0.63
1.3
75.76
35.6

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045893
54875911 - 54911208
35298
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806