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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54885215_54886380_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54885215 - 54886380
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATTACA
Flanking Amino Acid:
ARYCDSLLKKSSKNPEEAEL
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
38.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.8
0.76
0.8
77.5
35.6
Minor 5ss
39.1
-1.2
3.3
58.7
45.8
Minor BPS
56.2
0.19
1.9
72.95
38.2

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806
ENSAPLT00000045893
54875911 - 54911208
35298