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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54886680_54889663_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54886680 - 54889663
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAC|GCAAGTATC
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCGAA
U12 Branch Point Sequence:
TTCTCTGTTACA
Flanking Amino Acid:
IEKCGEAALNDPKMYVQTVL
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.9
89.2
28.7
Major BPS
49.7
-0
1.4
50.2
45.2
Major PPT
84.7
0.78
0.8
79.3
32.7
Minor 5ss
31.3
-2.1
3.9
45
36
Minor BPS
50.5
0.01
2.3
70.65
41.9

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806
ENSAPLT00000045893
54875911 - 54911208
35298