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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54889795_54893317_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54889795 - 54893317
Intron Length:
3523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTTTGTTACTT
Flanking Amino Acid:
QNLLDADKNEDLGRMYNLVS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
74.1
38.3
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
84.5
0.78
0.8
81.3
36
Minor 5ss
32.1
-2
3.1
40.2
45.9
Minor BPS
56.2
0.27
2.3
82.74
39.5

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806
ENSAPLT00000045893
54875911 - 54911208
35298