About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54896465_54897108_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54896465 - 54897108
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
ATTTTAGTAATA
Flanking Amino Acid:
RLISGVVQSYVELGLNEDDA
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
78.3
30.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
91.1
0.93
0.6
88.3
21.4
Minor 5ss
34.5
-1.8
2.8
38.6
41.7
Minor BPS
50
-0
2.2
70.26
36.2

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045893
54875911 - 54911208
35298
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806