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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54897200_54898285_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54897200 - 54898285
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGCTTTTAATC
Flanking Amino Acid:
DCLFRPLNKQVTNAVLKLIE
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.7
0.53
1
78.5
33.7
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
67.4
0.52
1.2
70.78
35

Associated Gene:

Gene:
CUL1
Ensembl Gene ID:
ENSAPLG00000010478
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045893
54875911 - 54911208
35298
ENSAPLT00000021174
54875427 - 54911716
36290
ENSAPLT00000019589
54875842 - 54907364
31523
ENSAPLT00000010964
54875911 - 54911716
35806