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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5490848_5518257_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5490848 - 5518257
Intron Length:
27410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTCTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTTCTCATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.2
0.77
0.8
81.5
28.8
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
49.6
0.05
1.8
66.98
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010095
5490734 - 5682914
192181