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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54976758_54997803_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54976758 - 54997803
Intron Length:
21046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TAATCTTTAATT
Flanking Amino Acid:
AATDPWHLDSASADFPYNGQ
Intron Amino Acid Position:
1210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.8
0.71
0.8
75.6
31.8
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
79.7
1.01
1
86.02
33.7

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447