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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_54998035_55040552_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54998035 - 55040552
Intron Length:
42518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTTGATT
Flanking Amino Acid:
PKALFLGKVIEIGKIDQDIY
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.8
0.58
0.9
70.8
35.9
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
83.2
1.13
0.9
94.4
25.5

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447