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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55040647_55053873_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55040647 - 55053873
Intron Length:
13227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TAGTCATTATTC
Flanking Amino Acid:
TRNERDIVLQLDHYPPTSYS
Intron Amino Acid Position:
1102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
84.2
0.77
0.7
80.2
25.1
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
53.3
0.08
1.9
64.73
40.9

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447