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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55055823_55069260_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55055823 - 55069260
Intron Length:
13438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCTGTTTTATTT
Flanking Amino Acid:
TAYDGPFCIKDVGAFFEEGM
Intron Amino Acid Position:
975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.6
0.67
1
78.8
33.5
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
48.6
-0
1.7
61.8
43.8

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447