About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55305295_55339665_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55305295 - 55339665
Intron Length:
34371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
CACTCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCTTTTTCCACT
Flanking Amino Acid:
GPLKVYCNMTEDKVWTTVYH
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
76.9
0.61
0.9
73.5
35.3
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
51.9
0.14
2
74.97
42.5

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447