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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5533632_5542129_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5533632 - 5542129
Intron Length:
8498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAACC
5'SS Class:
major
3'SS Sequence:
TTTATCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGGCTTTTATCT
Flanking Amino Acid:
RALKTISVISGLKTIVGALI
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
0.9
71
32.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.3
0.61
0.8
70.4
36.2
Minor 5ss
28.6
-2.4
2.9
35.3
40.9
Minor BPS
54.3
0.21
1.6
69.4
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009692
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024623
5493072 - 5682914
189843
ENSAPLT00000012448
5517801 - 5682914
165114
ENSAPLT00000048092
5493072 - 5682914
189843
ENSAPLT00000010095
5490734 - 5682914
192181
ENSAPLT00000043043
5517801 - 5682914
165114
ENSAPLT00000034804
5465146 - 5682914
217769