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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55339786_55370027_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55339786 - 55370027
Intron Length:
30242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCCGT
5'SS Class:
major
3'SS Sequence:
TATTTTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTATT
Flanking Amino Acid:
TGYSGATCHNSIYELSCEAY
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
56.9
47.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.1
0.81
0.8
78.3
39.6
Minor 5ss
42.5
-0.8
3.2
66.5
44.2
Minor BPS
63.1
0.49
1.8
84.66
35.8

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447