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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_55370135_55424931_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55370135 - 55424931
Intron Length:
54797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTCGTCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTCTTTCTATCT
Flanking Amino Acid:
VTIDMCAIIDRCVPNHCEHG
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
69.3
0.43
1
64.3
36.7
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
52
0.14
1.9
75.57
41.7

Associated Gene:

Gene:
CNTNAP2
Ensembl Gene ID:
ENSAPLG00000010463
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010897
54975304 - 55769750
794447